Hi,
I am having this strange issue where the flatpak would say that it is updated successfully, but the packages remain in the list of available updates.
The packages still works. And I have tried flatpak repair --user, to no success.
This propably due to the fact that I have to restore my home folder from a backup, via Déjà Dup. And I assuming there is a conficting cache file some where?
Is your disk ok? I have seem similar behavior on dying SSDs
It is ok. The corruption happened because I was trying to revert to a back up on mass (restoring my entire Home directory)